Checking folding inside and out

نویسنده

  • William A. Wells
چکیده

In This Issue In This Issue he ER is a site of both synthesis and quality control. Rejected, improperly folded proteins are destroyed by a well-characterized machinery (the ER-associated degradation [ERAD] pathway) in the cytosol and ER membrane that extracts and chews up any unfolded proteins. But the mechanisms for recognizing unfolded proteins as targets for destruction are less well characterized. The few unfolded substrates to be examined fall into a simple pattern: transmembrane proteins are recognized by one system and soluble, secreted proteins by another. Vashist and Ng (page 41) take a closer look and find that the two transmembrane proteins previously examined had defects in their cytoplasmic domains. When the defects are instead in the lumenal domains of transmem-brane proteins, these proteins are treated in the same way as soluble lumenal proteins. Thus, the two recognition categories depend not on membrane association but on the site of the unfolded domain. Any protein with an unfolded cytoplasmic domain is recognized by one system (ERAD-C), whereas proteins (both transmembrane and soluble) that have unfolded domains in the ER lumen are recognized by a second system (ERAD-L). Proteins subject to ERAD-C are retained in the ER and destroyed rapidly, whereas T Don't digest the messenger elping to create the lysosome is a dangerous job—stick with your task for too long and you might end up as dinner. Seaman (page 111) and Arighi et al. (page 123) now describe how the cation-independent mannose 6-phosphate receptor (CI-MPR) escorts lysosomal enzymes toward their future home but then escapes just in time thanks to a complex of proteins called the retromer. The retromer was first characterized in yeast, where it drags Vps10p from endosomes back to the Golgi. Vps10p and the mammalian CI-MPR have no sequence homology but do perform similar functions. So the researchers tested whether the retromer could also rescue CI-MPR. They first confirmed that both CI-MPR and the mammalian retromer are located in endosomes, with additional CI-MPR in the trans-Golgi network. After either knockout or siRNA knockdown of the retromer component Vps26, far more of the CI-MPR was found in endosomal compartments, with the rest of it spilling over either to the plasma membrane or to a nasty end at the hands of the lysosome. H Without retromer, CI-MPR (red) leaks through to late endosomes and lysosomes (green). This destruction of the CI-MPR apparently compromised its normal function. CI-MPR normally leads lysosomal …

برای دانلود رایگان متن کامل این مقاله و بیش از 32 میلیون مقاله دیگر ابتدا ثبت نام کنید

ثبت نام

اگر عضو سایت هستید لطفا وارد حساب کاربری خود شوید

منابع مشابه

Predicting Protein Folding Kinetics via Temporal Logic Model Checking: Extended Abstract

Christopher James Langmead and Sumit Kumar Jha Department of Computer Science, Carnegie Mellon University Abstract. We present a novel approach for predicting protein folding kinetics using techniques from the field of model checking. This represents the first time model checking has been applied to a problem in the field of structural biology. The protein’s energy landscape is encoded symbolic...

متن کامل

Using Bit Vector Decision Procedures for Analysis of Protein Folding Pathways

We explore the use of bit-vector decision procedures for the analysis of protein folding pathways. We argue that the protein folding problem is not identical to the classical probabilistic model checking problem in verification. Motivated by the different nature of the protein folding problem, we present a translation of the protein folding pathways analysis problem into a bounded model checkin...

متن کامل

Predicting Protein Folding Kinetics Via Temporal Logic Model Checking

We present a novel approach for predicting protein folding kinetics using techniques from the field of model checking. This represents the first time model checking has been applied to a problem in the field of structural biology. The protein’s energy landscape is encoded symbolically using Binary Decision Diagrams and related data structures. Questions regarding the kinetics of folding are enc...

متن کامل

Limits of protein folding inside GroE complexes.

The GroE chaperones of Escherichia coli promote the folding of other proteins under conditions where no spontaneous folding occurs. One requirement for this reaction is the trapping of the nonnative protein inside the chaperone complex. Encapsulation may be important to prevent unfavorable intermolecular interactions during folding. We show here that, especially for oligomeric proteins, the tim...

متن کامل

Npgrj_nsmb_1591 574..581

Most proteins must fold into precise three-dimensional conformations to fulfill their biological functions. Here we review recent concepts emerging from studies of protein folding in vitro and in vivo, with a focus on how proteins navigate the complex folding energy landscape inside cells with the aid of molecular chaperones. Understanding these reactions is also of considerable medical relevan...

متن کامل

ریخت‌شناسی انحنای تاخوردگی فرش دست‌باف تحت فشار استاتیکی

One of the most common procedures for exporting and warehousing handmade carpets is keeping them folded over one another. Handmade carpets come out of their stable states by being folded,while increasing storage time can cause serious and sometimes irreversible changes to them. In this research, a pilot model carpet has kept folded under a load equal to 50 g/cm2 and then the applied load increa...

متن کامل

ذخیره در منابع من


  با ذخیره ی این منبع در منابع من، دسترسی به آن را برای استفاده های بعدی آسان تر کنید

عنوان ژورنال:
  • The Journal of Cell Biology

دوره 165  شماره 

صفحات  -

تاریخ انتشار 2004